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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47100396_47101471_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47100396 - 47101471
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGTTA
5'SS Class:
major
3'SS Sequence:
TGTGTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CCCCTGTTAATA
Flanking Amino Acid:
LPNFLFLVYYWFVPESPRWL
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
70.3
36
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80
0.68
0.9
73.2
37.3
Minor 5ss
40.5
-1.1
3.3
52.6
46.4
Minor BPS
46.1
-0.3
2
51.1
41.6

Associated Gene:

Gene:
SLC22A3
Ensembl Gene ID:
ENSAPLG00000009972
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010390
47089164 - 47130335
41172