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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47104053_47105572_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47104053 - 47105572
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCTTCAACA
Flanking Amino Acid:
GAFTLGYAADRYGRILIYLL
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
100
1.24
0.5
100
0
Major PPT
84.5
0.78
0.8
81.6
28.9
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
78.6
0.89
1.4
87.68
29.9

Associated Gene:

Gene:
SLC22A3
Ensembl Gene ID:
ENSAPLG00000009972
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010390
47089164 - 47130335
41172