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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47105677_47114872_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47105677 - 47114872
Intron Length:
9196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
GAGTACTTACGC
Flanking Amino Acid:
HQPHSSIVSEYNLVCGHSWM
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
78.5
0.64
0.8
72.6
32.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
45.5
-0.3
2
53.17
44

Associated Gene:

Gene:
SLC22A3
Ensembl Gene ID:
ENSAPLG00000009972
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010390
47089164 - 47130335
41172