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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47115206_47130250_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47115206 - 47130250
Intron Length:
15045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
GGTTTCAGAAAA
Flanking Amino Acid:
LPEGFVSTFKTGVTFSFLFA
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
75.2
37.7
Major BPS
64.9
0.37
1
61
37.5
Major PPT
77.7
0.62
0.9
72.1
37.9
Minor 5ss
38.5
-1.3
3
50
46.2
Minor BPS
47.4
-0.2
1.8
60.41
38.4

Associated Gene:

Gene:
SLC22A3
Ensembl Gene ID:
ENSAPLG00000009972
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010390
47089164 - 47130335
41172