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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47132060_47133420_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47132060 - 47133420
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
CTTGCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTTCTTCTAACT
Flanking Amino Acid:
DYPGTSLVTEFNLVCEDSWK
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.1
0.68
0.8
73.3
31.6
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
59.8
0.39
1.7
78.64
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009219
47131649 - 47144579
12931