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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47133525_47138233_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47133525 - 47138233
Intron Length:
4709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTCCCTTTATT
Flanking Amino Acid:
GSMVIGYMADRFGRKLCLLI
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
89.1
0.88
0.6
84.1
24.1
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
73.8
0.83
1.5
89.88
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009219
47131649 - 47144579
12931