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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47141050_47141209_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47141050 - 47141209
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAA
U12 Branch Point Sequence:
TGGGCTTCAACC
Flanking Amino Acid:
RKHTCILMYSWFMSSVLYQG
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
60.4
0.26
1.3
65.6
41.4
Major PPT
68.6
0.42
0.9
61.8
39.9
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
54.8
0.13
1.7
63.03
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009219
47131649 - 47144579
12931