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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47143192_47143468_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47143192 - 47143468
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCATCCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGAGCTTTAGCC
Flanking Amino Acid:
VNPELYPTFLRNLGVLACSS
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.1
0.56
0.9
65.4
40.8
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
55.3
0.15
1.7
63.84
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009219
47131649 - 47144579
12931