About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47148799_47149098_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47148799 - 47149098
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AGCTGCTTATAT
Flanking Amino Acid:
ETVEDVENFHRQSAPKDKKI
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.5
0.66
0.9
72.9
37.4
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
47.1
-0.1
2.1
64.3
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007770
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028803
47146806 - 47160043
13238