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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47148965_47149098_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47148965 - 47149098
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTAATTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTAAGT
Flanking Amino Acid:
ETVEDVENFHRLTRLVLDSF
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71.3
0.48
1
61.9
43.3
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
66.4
0.59
1.9
84.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007770
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008139
47148727 - 47160043
11317