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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47152194_47152303_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47152194 - 47152303
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GACTGACTAACA
Flanking Amino Acid:
RKNTLILMYNWFTSSVLYQG
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
67.3
0.39
0.9
60.8
35.2
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
43.7
-0.4
2.2
55.47
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007770
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028803
47146806 - 47160043
13238
ENSAPLT00000008139
47148727 - 47160043
11317