About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47163607_47164025_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47163607 - 47164025
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGAG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GCTATATGAACA
Flanking Amino Acid:
TSGVSYKYTKINSEEEETNE
Intron Amino Acid Position:
2313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
66
40.1
Major BPS
66.7
0.41
1
57.8
39
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
35.3
-1.7
3.4
46.6
48.7
Minor BPS
48.2
-0.1
1.7
58.89
40.2

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478