About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47164616_47165945_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47164616 - 47165945
Intron Length:
1330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AATTTGTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCTTCTCAATT
Flanking Amino Acid:
TWYTSAVCPLMSNSVPGSRE
Intron Amino Acid Position:
2234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
68.9
0.43
1
67.7
42.7
Minor 5ss
34.4
-1.8
2.9
47
41.7
Minor BPS
69.8
0.7
1.5
83.48
38.1

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478