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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47172544_47172936_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47172544 - 47172936
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGTTGTTCAGA
Flanking Amino Acid:
QYTGGDRCPPVTEKGELCVF
Intron Amino Acid Position:
1850

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
71.5
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.6
0.87
0.6
87.8
22.3
Minor 5ss
30.1
-2.3
3.1
38.3
46.6
Minor BPS
42
-0.6
2.5
56.3
43.5

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478