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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47173145_47173649_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47173145 - 47173649
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
GGTGTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCTGATGT
Flanking Amino Acid:
LTSLSGRSFEVLSGSQSYHV
Intron Amino Acid Position:
1781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
62.2
0.27
1
54.3
40.7
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
49.5
0.04
2
73.14
43.6

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478