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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47173812_47174878_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47173812 - 47174878
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTTGGTAACA
Flanking Amino Acid:
VFHCSQGTGLGKPKMIRKLD
Intron Amino Acid Position:
1727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
77.5
0.62
1
73.3
40.9
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
52.6
0.08
2.6
78.35
38.8

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478