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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47176171_47177836_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47176171 - 47177836
Intron Length:
1666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TAAAAAATAAAA
Flanking Amino Acid:
WHTSLACEEEVRCSVLNGSS
Intron Amino Acid Position:
1606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
62
0.3
1
62.3
30.4
Major PPT
76.9
0.61
0.8
72.4
32.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
41.1
-0.6
2
51.88
38

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478