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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47179574_47180201_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47179574 - 47180201
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
GTTTTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TACAAGTTAACT
Flanking Amino Acid:
LRLKCDESRIESKPELIMAI
Intron Amino Acid Position:
1435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.6
42.3
Major BPS
64.7
0.37
1
73
31.5
Major PPT
74.9
0.56
1
73.5
41.9
Minor 5ss
33.9
-1.8
3.2
41.8
40.2
Minor BPS
49.2
0.02
2.3
71.02
45.2

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478