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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47184674_47184997_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47184674 - 47184997
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTTC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATCTCCTTCACA
Flanking Amino Acid:
RIIFQCDQTMGSPVFEQEND
Intron Amino Acid Position:
1178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
76.8
32.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
92.2
0.95
0.5
89.3
19.6
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
70.2
0.63
1.7
77.53
39.6

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478