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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47185177_47186013_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47185177 - 47186013
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTGAACTAAAAT
Flanking Amino Acid:
KPLPSVPGCPGGAIGSCVKY
Intron Amino Acid Position:
1118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.8
40.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
82.6
0.73
0.7
78.3
30.6
Minor 5ss
37.3
-1.4
3.1
44.3
44.6
Minor BPS
49.1
0.01
2
71.17
45

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478