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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47186158_47186689_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47186158 - 47186689
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ACATCTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
TTTCAGTTTACT
Flanking Amino Acid:
APAPVDCQVTDAAGNEYDLS
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
75.6
0.58
0.9
66.1
40
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
48.4
-0
2.5
79.03
42.5

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478