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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47186858_47187670_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47186858 - 47187670
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAG
U12 Branch Point Sequence:
TCTTGAGTAAAC
Flanking Amino Acid:
TYRGPLRVVSGTSDTFTVTF
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
59.9
0.25
1.6
59.3
47.1
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
42.6
-0.5
2.5
60.42
44.6

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478