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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47187846_47188485_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47187846 - 47188485
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTAAAACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAA
Flanking Amino Acid:
MATGIGKKFLLNICGPMPDC
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.3
0.37
1
56.2
44.1
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
65.7
0.49
1.3
70.27
36

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478