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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47190363_47190992_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47190363 - 47190992
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
VCQMEYRHDHDSYYEATSIS
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
78
0.63
0.9
70
40.5
Minor 5ss
34.4
-1.8
2.9
47
41.7
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478