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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47191670_47192247_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47191670 - 47192247
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
CCTCCCTTGACC
Flanking Amino Acid:
QAGVGQPEYQVEDKNTYNFR
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
79
0.65
0.8
76.9
37.3
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
70.5
0.63
1.3
71.26
40.4

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478