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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47192426_47193682_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47192426 - 47193682
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GAATTCTGCACA
Flanking Amino Acid:
TQSAACQVTQSKKQFWSLGL
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
48
-0.1
1.9
59.04
40

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478