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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47196903_47197676_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47196903 - 47197676
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTATCTAAAACT
Flanking Amino Acid:
VAGRFENQTLRYSDGDLTLI
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
84.9
26.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.8
0.58
0.9
74.1
35
Minor 5ss
40
-1.1
2.7
50.4
46.1
Minor BPS
51.8
0.14
2
73.34
43.6

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478