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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47197858_47198023_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47197858 - 47198023
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTGCTATAACA
Flanking Amino Acid:
IDLRPLTQLPDYVTPYLAKD
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.2
0.81
0.8
85.4
34.3
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
60.5
0.32
1.7
71.7
40.8

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478