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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47199775_47200713_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47199775 - 47200713
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTCAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CGTGTCTGAAGT
Flanking Amino Acid:
KEQLKRHDQDRLVLSYERLY
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
70.9
40.8
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
34.9
-1.7
3.2
50.2
46
Minor BPS
48.2
-0
1.9
64.64
45.8

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478