About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47200835_47201962_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
47200835 - 47201962

Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTGTGGACA

5'SS Class:
major

3'SS Sequence:
TGTTCTTTAACAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TAAAAAT

U12 Branch Point Sequence:
TGTTCTTTAACA

Flanking Amino Acid:
SLFINICRDLGNSGGEASNC

Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.4
0.67
0.9
70.1
35.4

Major BPS
62.8
0.32
1.1
67.9
34.4

Major PPT
80.9
0.7
0.9
77.2
35.8

Minor 5ss
33.2
-1.9
3
40.2
45.7

Minor BPS
86.2
1.13
0.9
88.17
28.7

Associated Gene:

Gene:
IGF2R

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

47161928 - 47215405
53478