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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47202589_47204241_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47202589 - 47204241
Intron Length:
1653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTCCTTTAAAT
Flanking Amino Acid:
NVNFLCGKTLGTPEFVTATE
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
79.8
35.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
68
0.41
0.9
65.6
33.8
Minor 5ss
37.9
-1.4
3
47.1
42.6
Minor BPS
71.5
0.75
1.4
82.63
38.5

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478