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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47209250_47215289_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47209250 - 47215289
Intron Length:
6040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TGGATACTAACC
Flanking Amino Acid:
VLGDAYRELCSYTWEAIDTD
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
46.2
-0.3
1.9
57.77
40.3

Associated Gene:

Gene:
IGF2R
Ensembl Gene ID:
ENSAPLG00000007173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007519
47161928 - 47215405
53478