About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4721430_4723141_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4721430 - 4723141
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TGAATTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTGTCTGAATT
Flanking Amino Acid:
RLAGSVAPAFQSPDLGDNLL
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
59.9
39.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
67.8
0.4
1
66.1
44.9
Minor 5ss
29.8
-2.3
3.1
38.2
40.5
Minor BPS
63.3
0.5
1.5
78.66
37.9

Associated Gene:

Gene:
PEX13
Ensembl Gene ID:
ENSAPLG00000006240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006470
4719344 - 4723215
3872