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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4724419_4727640_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4724419 - 4727640
Intron Length:
3222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCT
5'SS Class:
major
3'SS Sequence:
TGTCTTATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TCTGTCTTATCC
Flanking Amino Acid:
SQTLYRHPYKDLKHFCYRVV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.3
35
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
77.9
0.63
0.9
69.9
40.2
Minor 5ss
45.3
-0.5
2.4
60.2
44.2
Minor BPS
59.8
0.29
1.7
69.18
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025470
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024600
4724293 - 4727697
3405