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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47252305_47253462_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47252305 - 47253462
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
GCATATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
TATGTCTCAACA
Flanking Amino Acid:
NFIRGGASSINFSGEDVPSQ
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.1
63.7
42
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
76.7
0.6
0.9
73
41.6
Minor 5ss
35.4
-1.7
3.1
47.6
42.5
Minor BPS
62.5
0.39
1.6
72.46
39.4

Associated Gene:

Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777