About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47253569_47254115_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47253569 - 47254115
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
AGAGACAAAACA
Flanking Amino Acid:
SAHLLLHRVTKCSDTVEADP
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
75
35.2
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
30.7
-2.2
3.3
40.4
40
Minor BPS
41.2
-0.6
2
49.64
40.5

Associated Gene:

Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777