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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47254159_47254371_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47254159 - 47254371
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAAGT
Flanking Amino Acid:
AGYDAFLCGSVLLKSAHLLL
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85
0.79
0.7
77.9
30.9
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
58.8
0.35
2
78.77
43.9

Associated Gene:

Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777