About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47256495_47256693_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47256495 - 47256693
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTCTTTTACA
Flanking Amino Acid:
TKTVTKSIWRNHRFPRVSTL
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
91.8
0.94
0.6
87.1
23.5
Minor 5ss
39.2
-1.2
3.1
48.2
47.4
Minor BPS
71.5
0.67
1.6
78.96
37.6

Associated Gene:

Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777