Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47257085_47258003_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47257085 - 47258003

Intron Length:

919

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAACCC

5'SS Class:

major

3'SS Sequence:

GTTCTTCCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTTAT

U12 Branch Point Sequence:

GTTCTTCCAACA

Flanking Amino Acid:

LFQILVEAKKPLVGHNMFMD

Intron Amino Acid Position:

259

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

65.8

38.4

Major BPS

0.47

1.2

61.1

45.5

Major PPT

75.1

0.56

0.9

70.3

35.1

Minor 5ss

32.6

-2

3.1

43.3

43.8

Minor BPS

47.4

-0.2

1.8

62.42

37.3

Associated Gene:

Gene:

PNLDC1

Ensembl Gene ID:

ENSAPLG00000007014

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007276

47251098 - 47264874

13777