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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47258142_47259122_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47258142 - 47259122
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAA
U12 Branch Point Sequence:
TATCCAACATCT
Flanking Amino Acid:
VWTQPLEDSEVVVKKVSLQQ
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
60.3
0.26
1.2
70.7
35.5
Major PPT
86.5
0.82
0.8
84.4
30.5
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
42.3
-0.5
2.2
66.03
43.4

Associated Gene:

Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777