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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47260358_47260833_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47260358 - 47260833
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
GATCCTGCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTCCCTGATC
Flanking Amino Acid:
RLSEGSWRVCSAVGRNVMKK
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
81.3
32.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
66.4
0.37
0.9
62.6
39.4
Minor 5ss
36.8
-1.5
3.5
55
49.2
Minor BPS
70.7
0.63
1.6
82.69
30.7

Associated Gene:

Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777