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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47260923_47261588_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47260923 - 47261588
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
AGTAACTGACCA
Flanking Amino Acid:
LSHHGFDFNKFLKDGIPYMN
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
88
0.85
0.6
85.7
21.4
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
45.8
-0.3
1.9
57.84
40.7

Associated Gene:

Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777