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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47261713_47261861_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47261713 - 47261861
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
LAIFTKENSNKYVVHSYNFF
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.7
85.8
27.2
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777