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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47264391_47264639_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47264391 - 47264639
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCAACAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTCTTTTCAACA
Flanking Amino Acid:
VIPWERHCDSIQEFEKAMKE
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.2
85.2
29.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
64.9
0.33
1.1
65.8
39.2
Minor 5ss
27.2
-2.6
3.7
39.1
38.9
Minor BPS
59
0.28
1.6
66.33
40.9

Associated Gene:

Gene:
MRPL18
Ensembl Gene ID:
ENSAPLG00000006870
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007123
47264173 - 47266386
2214
Gene:
PNLDC1
Ensembl Gene ID:
ENSAPLG00000007014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007276
47251098 - 47264874
13777