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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47266480_47267264_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47266480 - 47267264
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TTCCCTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
TTCCCTTGCACA
Flanking Amino Acid:
TSGDSIRTQNVTAASAIANI
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.2
59.8
41.3
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
75.4
0.57
0.9
71.2
33.2
Minor 5ss
36.5
-1.5
3.6
51.5
45.3
Minor BPS
49.3
-0
1.9
65.35
41.2

Associated Gene:

Gene:
TCP1
Ensembl Gene ID:
ENSAPLG00000006259
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006535
47266407 - 47273418
7012