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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47268541_47268844_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47268541 - 47268844
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTGTCTTATTT
Flanking Amino Acid:
SIIGGYRLACKEAVRYINEN
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
84.7
0.78
0.7
80.1
31.6
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
65.2
0.56
1.7
82.89
39.2

Associated Gene:

Gene:
TCP1
Ensembl Gene ID:
ENSAPLG00000006259
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006535
47266407 - 47273418
7012