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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47269978_47270176_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47269978 - 47270176
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGGA
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTTCTGTAACT
Flanking Amino Acid:
DPEKLDQIRQRESDITKERI
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.2
39.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
34.5
-1.8
2.9
41.6
44.9
Minor BPS
64.1
0.52
2
81.74
40.3

Associated Gene:

Gene:
TCP1
Ensembl Gene ID:
ENSAPLG00000006259
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006535
47266407 - 47273418
7012