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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47270064_47273822_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47270064 - 47273822
Intron Length:
3759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGAAAGC
5'SS Class:
major
3'SS Sequence:
CTCTTGCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TAACATTTAAAA
Flanking Amino Acid:
VTLLHALERTVKITSSHPN*
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
59.2
40
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.2
0.68
0.8
77
31.8
Minor 5ss
26.3
-2.7
3.1
34.1
41.6
Minor BPS
52.3
0.07
1.6
61.79
37.2

Associated Gene:

Gene:
ACAT2
Ensembl Gene ID:
ENSAPLG00000006048
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038021
47270035 - 47281060
11026