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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47271180_47272320_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47271180 - 47272320
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCAACAGAACT
Flanking Amino Acid:
ICDDELILIKNTKARTSASI
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
73.3
34.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
87.6
0.85
0.6
84.5
23.6
Minor 5ss
35.2
-1.7
3.1
44.8
36.8
Minor BPS
48.3
-0
2
72.17
43.8

Associated Gene:

Gene:
TCP1
Ensembl Gene ID:
ENSAPLG00000006259
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006535
47266407 - 47273418
7012