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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47272514_47272806_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47272514 - 47272806
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGTTTTTAAACT
Flanking Amino Acid:
IYLENYATSMGSREQLAIAE
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.5
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.3
0.86
0.6
84.3
23.8
Minor 5ss
36.1
-1.6
3
47.2
43.4
Minor BPS
61.8
0.45
1.7
76.7
40.1

Associated Gene:

Gene:
TCP1
Ensembl Gene ID:
ENSAPLG00000006259
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006535
47266407 - 47273418
7012